5L83 image
Deposition Date 2016-06-06
Release Date 2016-08-03
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5L83
Keywords:
Title:
Complex of potato ATG8 protein with a peptide from Irish potato famine pathogen effector protein PexRD54
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Autophagy-related protein
Gene (Uniprot):ATG8CL
Chain IDs:C (auth: A), D (auth: B)
Chain Length:112
Number of Molecules:2
Biological Source:Solanum tuberosum
Polymer Type:polypeptide(L)
Molecule:ASP-TRP-GLU-ILE-VAL
Chain IDs:A (auth: C), B (auth: D)
Chain Length:5
Number of Molecules:2
Biological Source:Phytophthora infestans
Primary Citation
Structural Basis of Host Autophagy-related Protein 8 (ATG8) Binding by the Irish Potato Famine Pathogen Effector Protein PexRD54.
J.Biol.Chem. 291 20270 20282 (2016)
PMID: 27458016 DOI: 10.1074/jbc.M116.744995

Abstact

Filamentous plant pathogens deliver effector proteins to host cells to promote infection. The Phytophthora infestans RXLR-type effector PexRD54 binds potato ATG8 via its ATG8 family-interacting motif (AIM) and perturbs host-selective autophagy. However, the structural basis of this interaction remains unknown. Here, we define the crystal structure of PexRD54, which includes a modular architecture, including five tandem repeat domains, with the AIM sequence presented at the disordered C terminus. To determine the interface between PexRD54 and ATG8, we solved the crystal structure of potato ATG8CL in complex with a peptide comprising the effector's AIM sequence, and we established a model of the full-length PexRD54-ATG8CL complex using small angle x-ray scattering. Structure-informed deletion of the PexRD54 tandem domains reveals retention of ATG8CL binding in vitro and in planta This study offers new insights into structure/function relationships of oomycete RXLR effectors and how these proteins engage with host cell targets to promote disease.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback