5L35 image
Deposition Date 2016-08-03
Release Date 2017-03-22
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5L35
Keywords:
Title:
Cryo-EM structure of bacteriophage Sf6 at 2.9 Angstrom resolution
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Gene 5 protein
Gene (Uniprot):5
Chain IDs:A, B, C, D, E, F, G
Chain Length:422
Number of Molecules:7
Biological Source:Shigella phage Sf6
Ligand Molecules
Primary Citation
Structure of a headful DNA-packaging bacterial virus at 2.9 angstrom resolution by electron cryo-microscopy.
Proc. Natl. Acad. Sci. U.S.A. 114 3601 3606 (2017)
PMID: 28320961 DOI: 10.1073/pnas.1615025114

Abstact

The enormous prevalence of tailed DNA bacteriophages on this planet is enabled by highly efficient self-assembly of hundreds of protein subunits into highly stable capsids. These capsids can stand with an internal pressure as high as ∼50 atmospheres as a result of the phage DNA-packaging process. Here we report the complete atomic model of the headful DNA-packaging bacteriophage Sf6 at 2.9 Å resolution determined by electron cryo-microscopy. The structure reveals the DNA-inflated, tensed state of a robust protein shell assembled via noncovalent interactions. Remarkable global conformational polymorphism of capsid proteins, a network formed by extended N arms, mortise-and-tenon-like intercapsomer joints, and abundant β-sheet-like mainchain:mainchain intermolecular interactions, confers significant strength yet also flexibility required for capsid assembly and DNA packaging. Differential formations of the hexon and penton are mediated by a drastic α-helix-to-β-strand structural transition. The assembly scheme revealed here may be common among tailed DNA phages and herpesviruses.

Legend

Protein

Chemical

Disease

Primary Citation of related structures