5L2X image
Deposition Date 2016-08-02
Release Date 2016-11-23
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5L2X
Keywords:
Title:
Crystal structure of human PrimPol ternary complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA-directed primase/polymerase protein
Gene (Uniprot):PRIMPOL
Chain IDs:A, D (auth: B)
Chain Length:353
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*CP*GP*CP*(5IU)P*AP*CP*C)-3')
Chain IDs:B (auth: C), E (auth: G)
Chain Length:17
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*TP*AP*GP*CP*(DDG))-3')
Chain IDs:C (auth: D), F (auth: H)
Chain Length:13
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structure and mechanism of human PrimPol, a DNA polymerase with primase activity.
Sci Adv 2 e1601317 e1601317 (2016)
PMID: 27819052 DOI: 10.1126/sciadv.1601317

Abstact

PrimPol is a novel human enzyme that contains both DNA primase and DNA polymerase activities. We present the first structure of human PrimPol in ternary complex with a DNA template-primer and an incoming deoxynucleoside triphosphate (dNTP). The ability of PrimPol to function as a DNA primase stems from a simple but remarkable feature-almost complete lack of contacts to the DNA primer strand. This, in turn, allows two dNTPs to bind initiation and elongation sites on the enzyme for the formation of the first dinucleotide. PrimPol shows the ability to synthesize DNA opposite ultraviolet (UV) lesions; however, unexpectedly, the active-site cleft of the enzyme is constrained, which precludes the bypass of UV-induced DNA lesions by conventional translesion synthesis. Together, the structure addresses long-standing questions about how DNA primases actually initiate synthesis and how primase and polymerase activities combine in a single enzyme to carry out DNA synthesis.

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