5L2L image
Deposition Date 2016-08-02
Release Date 2016-12-21
Last Version Date 2024-05-08
Entry Detail
PDB ID:
5L2L
Title:
Nab2 Zn fingers 5-7 bound to A11G RNA
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nab2p
Chain IDs:A, B, E, F
Chain Length:77
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae YJM1574
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*G)-3')
Chain IDs:C, D, G, H
Chain Length:12
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae.
Nucleic Acids Res. 45 1529 1538 (2017)
PMID: 28180315 DOI: 10.1093/nar/gkw1224

Abstact

In Saccharomyces cerevisiae generation of export-competent mRNPs terminates the nuclear phase of the gene expression pathway and facilitates transport to the cytoplasm for translation. Nab2 functions in this process to control both mRNP compaction that facilitates movement through nuclear pore complexes and the length of transcript poly(A) tails. Nab2 has a modular structure that includes seven CCCH Zn fingers that bind to A-rich RNAs and fingers 5–7 are critical for these functions. Here, we demonstrate, using both biophysical and structural methods, that binding A11G RNA induces dimerization of Zn fingers 5–7 mediated by the novel spatial arrangement of the fingers promoting each RNA chain binding two protein chains. The dimerization of Nab2 induced by RNA binding provides a basis for understanding its function in both poly(A) tail length regulation and in the compaction of mature transcripts to facilitate nuclear export.

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Primary Citation of related structures