5L21 image
Deposition Date 2016-07-29
Release Date 2017-08-09
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5L21
Keywords:
Title:
Crystal structure of BoNT/A receptor binding domain in complex with VHH C2
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.68 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Botulinum neurotoxin type A
Mutagens:T1158A
Chain IDs:A
Chain Length:428
Number of Molecules:1
Biological Source:Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A)
Polymer Type:polypeptide(L)
Molecule:VHH-C2
Chain IDs:B
Chain Length:119
Number of Molecules:1
Biological Source:Vicugna pacos
Primary Citation
A camelid single-domain antibody neutralizes botulinum neurotoxin A by blocking host receptor binding.
Sci Rep 7 7438 7438 (2017)
PMID: 28785006 DOI: 10.1038/s41598-017-07457-5

Abstact

Antibody treatment is currently the only available countermeasure for botulism, a fatal illness caused by flaccid paralysis of muscles due to botulinum neurotoxin (BoNT) intoxication. Among the seven major serotypes of BoNT/A-G, BoNT/A poses the most serious threat to humans because of its high potency and long duration of action. Prior to entering neurons and blocking neurotransmitter release, BoNT/A recognizes motoneurons via a dual-receptor binding process in which it engages both the neuron surface polysialoganglioside (PSG) and synaptic vesicle glycoprotein 2 (SV2). Previously, we identified a potent neutralizing antitoxin against BoNT/A1 termed ciA-C2, derived from a camelid heavy-chain-only antibody (VHH). In this study, we demonstrate that ciA-C2 prevents BoNT/A1 intoxication by inhibiting its binding to neuronal receptor SV2. Furthermore, we determined the crystal structure of ciA-C2 in complex with the receptor-binding domain of BoNT/A1 (HCA1) at 1.68 Å resolution. The structure revealed that ciA-C2 partially occupies the SV2-binding site on HCA1, causing direct interference of HCA1 interaction with both the N-glycan and peptide-moiety of SV2. Interestingly, this neutralization mechanism is similar to that of a monoclonal antibody in clinical trials, despite that ciA-C2 is more than 10-times smaller. Taken together, these results enlighten our understanding of BoNT/A1 interactions with its neuronal receptor, and further demonstrate that inhibiting toxin binding to the host receptor is an efficient countermeasure strategy.

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Primary Citation of related structures
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