5KY9 image
Deposition Date 2016-07-21
Release Date 2017-05-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5KY9
Keywords:
Title:
mouse POFUT1 in complex with mouse Notch1 EGF12 mutant (D464G/A465G) and GDP
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.83 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GDP-fucose protein O-fucosyltransferase 1
Gene (Uniprot):Pofut1
Chain IDs:A
Chain Length:355
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Neurogenic locus notch homolog protein 1
Gene (Uniprot):Notch1
Chain IDs:B
Chain Length:40
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol. 13 757 763 (2017)
PMID: 28530709 DOI: 10.1038/nchembio.2381

Abstact

Protein O-fucosyltransferase 1 (POFUT1) fucosylates the epidermal growth factor (EGF)-like domains found in cell-surface and secreted glycoproteins including Notch and its ligands. Although Notch fucosylation is critical for development, and POFUT1 deficiency leads to human disease, how this enzyme binds and catalyzes the fucosylation of its diverse EGF-like domain substrates has not been determined. Reported here is the X-ray crystal structure of mouse POFUT1 in complex with several EGF-like domains, including EGF12 and EGF26 of Notch. Overall shape complementarity, interactions with invariant atoms of the fucosylation motif and flexible segments on POFUT1 all define its EGF-like-domain binding properties. Using large-scale structural and sequence analysis, we also show that POFUT1 binds EGF-like domains of the hEGF type and that the highly correlated presence of POFUT1 and fucosylatable hEGFs has accompanied animal evolution.

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Primary Citation of related structures