5KXU image
Entry Detail
PDB ID:
5KXU
Keywords:
Title:
Structure Proteinase K determined by SACLA
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-07-20
Release Date:
2017-06-07
Method Details:
Experimental Method:
Resolution:
1.20 Å
R-Value Free:
0.12
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Proteinase K
Chain IDs:A
Chain Length:279
Number of Molecules:1
Biological Source:Engyodontium album
Primary Citation
Atomic resolution structure of serine protease proteinase K at ambient temperature.
Sci Rep 7 45604 45604 (2017)
PMID: 28361898 DOI: 10.1038/srep45604

Abstact

Atomic resolution structures (beyond 1.20 Å) at ambient temperature, which is usually hampered by the radiation damage in synchrotron X-ray crystallography (SRX), will add to our understanding of the structure-function relationships of enzymes. Serial femtosecond crystallography (SFX) has attracted surging interest by providing a route to bypass such challenges. Yet the progress on atomic resolution analysis with SFX has been rather slow. In this report, we describe the 1.20 Å resolution structure of proteinase K using 13 keV photon energy. Hydrogen atoms, water molecules, and a number of alternative side-chain conformations have been resolved. The increase in the value of B-factor in SFX suggests that the residues and water molecules adjacent to active sites were flexible and exhibited dynamic motions at specific substrate-recognition sites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures