5KTL image
Entry Detail
PDB ID:
5KTL
Keywords:
Title:
Dihydrodipicolinate synthase from the industrial and evolutionarily important cyanobacteria Anabaena variabilis.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-07-11
Release Date:
2016-11-30
Method Details:
Experimental Method:
Resolution:
1.92 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:4-hydroxy-tetrahydrodipicolinate synthase
Chain IDs:A, B
Chain Length:330
Number of Molecules:2
Biological Source:Anabaena variabilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KPI A LYS modified residue
Ligand Molecules
Primary Citation
Structure and Function of Cyanobacterial DHDPS and DHDPR.
Sci Rep 6 37111 37111 (2016)
PMID: 27845445 DOI: 10.1038/srep37111

Abstact

Lysine biosynthesis in bacteria and plants commences with a condensation reaction catalysed by dihydrodipicolinate synthase (DHDPS) followed by a reduction reaction catalysed by dihydrodipicolinate reductase (DHDPR). Interestingly, both DHDPS and DHDPR exist as different oligomeric forms in bacteria and plants. DHDPS is primarily a homotetramer in all species, but the architecture of the tetramer differs across kingdoms. DHDPR also exists as a tetramer in bacteria, but has recently been reported to be dimeric in plants. This study aimed to characterise for the first time the structure and function of DHDPS and DHDPR from cyanobacteria, which is an evolutionary important phylum that evolved at the divergence point between bacteria and plants. We cloned, expressed and purified DHDPS and DHDPR from the cyanobacterium Anabaena variabilis. The recombinant enzymes were shown to be folded by circular dichroism spectroscopy, enzymatically active employing the quantitative DHDPS-DHDPR coupled assay, and form tetramers in solution using analytical ultracentrifugation. Crystal structures of DHDPS and DHDPR from A. variabilis were determined at 1.92 Å and 2.83 Å, respectively, and show that both enzymes adopt the canonical bacterial tetrameric architecture. These studies indicate that the quaternary structure of bacterial and plant DHDPS and DHDPR diverged after cyanobacteria evolved.

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Primary Citation of related structures