5KTE image
Entry Detail
PDB ID:
5KTE
Title:
Crystal structure of Deinococcus radiodurans MntH, an Nramp-family transition metal transporter
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-07-11
Release Date:
2016-11-23
Method Details:
Experimental Method:
Resolution:
3.94 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Divalent metal cation transporter MntH
Mutations:Q169H, K170HH, E251Y, E252Y, K253Y, R398H, R399H
Chain IDs:A
Chain Length:420
Number of Molecules:1
Biological Source:Deinococcus radiodurans
Polymer Type:polypeptide(L)
Description:Fab Heavy Chain
Chain IDs:B (auth: H)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab Light Chain
Chain IDs:C (auth: L)
Chain Length:213
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Crystal Structure and Conformational Change Mechanism of a Bacterial Nramp-Family Divalent Metal Transporter.
Structure 24 2102 2114 (2016)
PMID: 27839948 DOI: 10.1016/j.str.2016.09.017

Abstact

The widely conserved natural resistance-associated macrophage protein (Nramp) family of divalent metal transporters enables manganese import in bacteria and dietary iron uptake in mammals. We determined the crystal structure of the Deinococcus radiodurans Nramp homolog (DraNramp) in an inward-facing apo state, including the complete transmembrane (TM) segment 1a (absent from a previous Nramp structure). Mapping our cysteine accessibility scanning results onto this structure, we identified the metal-permeation pathway in the alternate outward-open conformation. We investigated the functional impact of two natural anemia-causing glycine-to-arginine mutations that impaired transition metal transport in both human Nramp2 and DraNramp. The TM4 G153R mutation perturbs the closing of the outward metal-permeation pathway and alters the selectivity of the conserved metal-binding site. In contrast, the TM1a G45R mutation prevents conformational change by sterically blocking the essential movement of that helix, thus locking the transporter in an inward-facing state.

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Primary Citation of related structures