5KSB image
Entry Detail
PDB ID:
5KSB
Keywords:
Title:
T15-DQ8.5-glia-gamma1 complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-07-08
Release Date:
2016-09-21
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DQ alpha 1 chain
Chain IDs:A, C
Chain Length:191
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HLA class II histocompatibility antigen, DQ beta 1 chain
Chain IDs:B, D
Chain Length:225
Number of Molecules:2
Biological Source:Triticum aestivum, Homo sapiens
Polymer Type:polypeptide(L)
Description:T15 TCR alpha TRAV20*02
Chain IDs:E, G
Chain Length:206
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:T15 TCR beta TRBV9*01
Chain IDs:F, H
Chain Length:243
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:DQ8.5-glia-gamma1 peptide
Chain IDs:I, J
Chain Length:11
Number of Molecules:2
Biological Source:Triticum aestivum
Ligand Molecules
Primary Citation
Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.
Structure 24 1643 1657 (2016)
PMID: 27568928 DOI: 10.1016/j.str.2016.07.010

Abstact

In HLA-DQ8-associated celiac disease, TRAV26-2+-TRBV9+ and TRAV8-3+-TRBV6+ T cells recognize the immunodominant DQ8-glia-α1 epitope, whereupon a non-germline-encoded arginine residue played a key role in binding HLA-DQ8-glia-α1. Whether distinct T cell receptor (TCR) recognition modes exist for gliadin epitopes remains unclear. TCR repertoire analysis revealed populations of HLA-DQ8-glia-α1 and HLA-DQ8.5-glia-γ1 restricted TRAV20+-TRBV9+ T cells that did not possess a non-germline-encoded arginine residue. The crystal structures of a TRAV20+-TRBV9+ TCR-HLA-DQ8-glia-α1 complex and two TRAV20+-TRBV9+ TCR-HLA-DQ8.5-glia-γ1 complexes were determined. This revealed that the differential specificity toward DQ8-glia-α1 and DQ8.5-glia-γ1 was governed by CDR3β-loop-mediated interactions. Surprisingly, a germline-encoded arginine residue within the CDR1α loop of the TRAV20+ TCR substituted for the role of the non-germline-encoded arginine in the TRAV26-2+-TRBV9+ and TRAV8-3+-TRBV6+ TCRs. Thus, in celiac disease, the responding TCR repertoire is driven by a common mechanism that selects for structural elements within the TCR that have convergent binding solutions in HLA-DQ8-gliadin recognition.

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Primary Citation of related structures