5KS8 image
Entry Detail
PDB ID:
5KS8
Keywords:
Title:
Crystal structure of two-subunit pyruvate carboxylase from Methylobacillus flagellatus
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-07-07
Release Date:
2016-10-19
Method Details:
Experimental Method:
Resolution:
3.01 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pyruvate carboxylase subunit alpha
Chain IDs:A, B
Chain Length:405
Number of Molecules:2
Biological Source:Methylobacillus flagellatus, Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)
Polymer Type:polypeptide(L)
Description:Pyruvate carboxylase subunit beta
Chain IDs:C, D, E, F
Chain Length:617
Number of Molecules:4
Biological Source:Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)
Primary Citation
A distinct holoenzyme organization for two-subunit pyruvate carboxylase.
Nat Commun 7 12713 12713 (2016)
PMID: 27708276 DOI: 10.1038/ncomms12713

Abstact

Pyruvate carboxylase (PC) has important roles in metabolism and is crucial for virulence for some pathogenic bacteria. PC contains biotin carboxylase (BC), carboxyltransferase (CT) and biotin carboxyl carrier protein (BCCP) components. It is a single-chain enzyme in eukaryotes and most bacteria, and functions as a 500 kD homo-tetramer. In contrast, PC is a two-subunit enzyme in a collection of Gram-negative bacteria, with the α subunit containing the BC and the β subunit the CT and BCCP domains, and it is believed that the holoenzyme has α4β4 stoichiometry. We report here the crystal structures of a two-subunit PC from Methylobacillus flagellatus. Surprisingly, our structures reveal an α2β4 stoichiometry, and the overall architecture of the holoenzyme is strikingly different from that of the homo-tetrameric PCs. Biochemical and mutagenesis studies confirm the stoichiometry and other structural observations. Our functional studies in Pseudomonas aeruginosa show that its two-subunit PC is important for colony morphogenesis.

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