5KQO image
Entry Detail
PDB ID:
5KQO
Keywords:
Title:
1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-07-06
Release Date:
2017-07-12
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:1-deoxy-D-xylulose 5-phosphate reductoisomerase
Chain IDs:A, B
Chain Length:427
Number of Molecules:2
Biological Source:Vibrio vulnificus (strain CMCP6)
Primary Citation
Structural characterization of 1-deoxy-D-xylulose 5-phosphate Reductoisomerase from Vibrio vulnificus.
Biochim Biophys Acta Proteins Proteom 1866 1209 1215 (2018)
PMID: 30278288 DOI: 10.1016/j.bbapap.2018.09.008

Abstact

Vibrio vulnificus, a gram-negative bacterium, is the leading cause of seafood-borne illnesses and mortality in the United States. Previous studies have identified metabolites 2-C-methylerythritol 4-phosphate (MEP) as being essential for V. vulnificus growth and function. It was shown that 1-deoxy-D-xylulose-5-phosphate reductoisomerase (Dxr) is a critical enzyme in the viability of V. vulnificus, and many other bacteria, as it catalyzes the rearrangement of 1-deoxy-D-xylulose-5-phosphate (Dxp) to 2-C-methylerythritol 4-phosphate (MEP) within the MEP pathway, found in plants and bacteria. The MEP pathway produces the isoprenoids, isopentenyl diphosphate and dimethylallyl pyrophosphate. In this study, we produced and structurally characterized V. vulnificus Dxr. The enzyme forms a dimeric assembly and contains a metal ion in the active site. Protein produced in Escherichia coli co-purifies with Mg2+ ions, however the Mg2+ cations may be substituted with Mn2+, as both of these metals may be utilized by Dxrs. These findings will provide a basis for the design of Dxr inhibitors that may find application as antimicrobial compounds.

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