5KJK image
Deposition Date 2016-06-20
Release Date 2016-12-07
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5KJK
Title:
SMYD2 in complex with AZ370
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:N-lysine methyltransferase SMYD2
Gene (Uniprot):SMYD2
Mutations:G165E
Chain IDs:A
Chain Length:429
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Design, Synthesis, and Biological Activity of Substrate Competitive SMYD2 Inhibitors.
J. Med. Chem. 59 11079 11097 (2016)
PMID: 28002961

Abstact

Protein lysine methyltransferases (KMTs) have emerged as important regulators of epigenetic signaling. These enzymes catalyze the transfer of donor methyl groups from the cofactor S-adenosylmethionine to specific acceptor lysine residues on histones, leading to changes in chromatin structure and transcriptional regulation. These enzymes also methylate an array of nonhistone proteins, suggesting additional mechanisms by which they influence cellular physiology. SMYD2 is reported to be an oncogenic methyltransferase that represses the functional activity of the tumor suppressor proteins p53 and RB. HTS screening led to identification of five distinct substrate-competitive chemical series. Determination of liganded crystal structures of SMYD2 contributed significantly to "hit-to-lead" design efforts, culminating in the creation of potent and selective inhibitors that were used to understand the functional consequences of SMYD2 inhibition. Taken together, these results have broad implications for inhibitor design against KMTs and clearly demonstrate the potential for developing novel therapies against these enzymes.

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Primary Citation of related structures