5KHW image
Entry Detail
PDB ID:
5KHW
Keywords:
Title:
Crystal structure of JAK1 in complex with ADP
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-06-16
Release Date:
2016-11-09
Method Details:
Experimental Method:
Resolution:
2.47 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tyrosine-protein kinase JAK1
Chain IDs:A, B
Chain Length:316
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PTR A TYR modified residue
Primary Citation
Development of a high-throughput crystal structure-determination platform for JAK1 using a novel metal-chelator soaking system.
Acta Crystallogr F Struct Biol Commun 72 840 845 (2016)
PMID: 27827355 DOI: 10.1107/S2053230X16016356

Abstact

Crystals of phosphorylated JAK1 kinase domain were initially generated in complex with nucleotide (ADP) and magnesium. The tightly bound Mg2+-ADP at the ATP-binding site proved recalcitrant to ligand displacement. Addition of a molar excess of EDTA helped to dislodge the divalent metal ion, promoting the release of ADP and allowing facile exchange with ATP-competitive small-molecule ligands. Many kinases require the presence of a stabilizing ligand in the ATP site for crystallization. This procedure could be useful for developing co-crystallization systems with an exchangeable ligand to enable structure-based drug design of other protein kinases.

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Primary Citation of related structures