5KHR image
Entry Detail
PDB ID:
5KHR
Keywords:
Title:
Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2016-06-15
Release Date:
2016-08-24
Method Details:
Experimental Method:
Resolution:
6.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 1
Chain IDs:A
Chain Length:1944
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 11
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle protein 23 homolog
Chain IDs:C, O (auth: P)
Chain Length:597
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 16
Chain IDs:D (auth: E)
Chain Length:110
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle protein 27 homolog
Chain IDs:E (auth: F), G (auth: H)
Chain Length:824
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit CDC26
Chain IDs:F (auth: G), S (auth: W)
Chain Length:85
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 4
Chain IDs:H (auth: I)
Chain Length:818
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle protein 16 homolog
Chain IDs:I (auth: J), J (auth: K)
Chain Length:620
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 10
Chain IDs:K (auth: L)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 13
Chain IDs:L (auth: M)
Chain Length:74
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 2
Chain IDs:M (auth: N)
Chain Length:822
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 5
Chain IDs:N (auth: O)
Chain Length:755
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Ubiquitin-conjugating enzyme E2 C
Chain IDs:P (auth: Q)
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cell division cycle protein 20 homolog
Chain IDs:Q (auth: R)
Chain Length:499
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HSL1 peptide
Chain IDs:R (auth: S)
Chain Length:33
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Anaphase-promoting complex subunit 7
Chain IDs:T (auth: X), U (auth: Y)
Chain Length:565
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.
Mol.Cell 63 593 607 (2016)
PMID: 27522463 DOI: 10.1016/j.molcel.2016.07.003

Abstact

The mitotic checkpoint complex (MCC) coordinates proper chromosome biorientation on the spindle with ubiquitination activities of CDC20-activated anaphase-promoting complex/cyclosome (APC/C(CDC20)). APC/C(CDC20) and two E2s, UBE2C and UBE2S, catalyze ubiquitination through distinct architectures for linking ubiquitin (UB) to substrates and elongating polyUB chains, respectively. MCC, which contains a second molecule of CDC20, blocks APC/C(CDC20)-UBE2C-dependent ubiquitination of Securin and Cyclins, while differentially determining or inhibiting CDC20 ubiquitination to regulate spindle surveillance, checkpoint activation, and checkpoint termination. Here electron microscopy reveals conformational variation of APC/C(CDC20)-MCC underlying this multifaceted regulation. MCC binds APC/C-bound CDC20 to inhibit substrate access. However, rotation about the CDC20-MCC assembly and conformational variability of APC/C modulate UBE2C-catalyzed ubiquitination of MCC's CDC20 molecule. Access of UBE2C is limiting for subsequent polyubiquitination by UBE2S. We propose that conformational dynamics of APC/C(CDC20)-MCC modulate E2 activation and determine distinctive ubiquitination activities as part of a response mechanism ensuring accurate sister chromatid segregation.

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Disease

Primary Citation of related structures