ISDA

Deposition Date 2016-06-14

Release Date 2016-07-20

Last Version Date 2024-03-06

Entry Detail

PDB ID:

5KH5

Keywords:

TRANSFERASE/TRANSFERASE INHIBITOR

Title:

Crystal Structure of Steptococcus pneumoniae Undecaprenyl pyrophosphate Synthase (UPPS) IN COMPLEX WITH ~{N}-(3-azanyl-3-oxidanylidene-propyl)-5-(1-benzothiophen-5-yl)-1-(phenylmethyl)-~{N}-[(4-propan-2-yloxyphenyl)methyl]pyrazole-4-carboxamide

Biological Source:

Source Organism:

Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) (Taxon ID: 170187)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.63 Å

R-Value Free:

0.27

R-Value Work:

0.23

R-Value Observed:

0.24

Space Group:

I 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Isoprenyl transferase
Gene (Uniprot):uppS
Chain IDs:A, B
Chain Length:272
Number of Molecules:2
Biological Source:Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)

UniProt ID:Q97SR4 Pfam ID:PF01255 EC:2.5.1.31

Ligand Molecules

6TC

Primary Citation

Discovery and Characterization of a Class of Pyrazole Inhibitors of Bacterial Undecaprenyl Pyrophosphate Synthase.

Concha, N, Huang, J, Bai, X, Benowitz, A, Brady, P, Grady, L.C, Kryn, L.H, Holmes, D, Ingraham, K, Jin, Q, Pothier Kaushansky, L, McCloskey, L, Messer, J.A, O'Keefe, H, Patel, A, Satz, A.L, Sinnamon, R.H, Schneck, J, Skinner, S.R, Summerfield, J, Taylor, A, Taylor, J.D, Evindar, G, Stavenger, R.A.Show

J.Med.Chem. 59 7299 7304 (2016)

PMID: 27379833 DOI: 10.1021/acs.jmedchem.6b00746

Abstact

Undecaprenyl pyrophosphate synthase (UppS) is an essential enzyme in bacterial cell wall synthesis. Here we report the discovery of Staphylococcus aureus UppS inhibitors from an Encoded Library Technology screen and demonstrate binding to the hydrophobic substrate site through cocrystallography studies. The use of bacterial strains with regulated uppS expression and inhibitor resistant mutant studies confirmed that the whole cell activity was the result of UppS inhibition, validating UppS as a druggable antibacterial target.

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Primary Citation of related structures