5KER image
Deposition Date 2016-06-10
Release Date 2017-04-05
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5KER
Title:
Deer mouse recombinant hemoglobin from high altitude species
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-globin
Gene (Uniprot):HBA
Chain IDs:A (auth: C), C (auth: E), E (auth: G), G (auth: A)
Chain Length:141
Number of Molecules:4
Biological Source:Peromyscus maniculatus
Polymer Type:polypeptide(L)
Molecule:Beta globin
Gene (Uniprot):HBB
Chain IDs:B (auth: D), D (auth: F), F (auth: H), H (auth: B)
Chain Length:146
Number of Molecules:4
Biological Source:Peromyscus maniculatus
Ligand Molecules
Primary Citation
Alteration of the alpha 1 beta 2/ alpha 2 beta 1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice.
PLoS ONE 12 e0174921 e0174921 (2017)
PMID: 28362841 DOI: 10.1371/journal.pone.0174921

Abstact

BACKGROUND Deer mice (Peromyscus maniculatus) that are native to high altitudes in the Rocky Mountains have evolved hemoglobins with an increased oxygen-binding affinity relative to those of lowland conspecifics. To elucidate the molecular mechanisms responsible for the evolved increase in hemoglobin-oxygen affinity, the crystal structure of the highland hemoglobin variant was solved and compared with the previously reported structure for the lowland variant. RESULTS Highland hemoglobin yielded at least two crystal types, in which the longest axes were 507 and 230 Å. Using the smaller unit cell crystal, the structure was solved at 2.2 Å resolution. The asymmetric unit contained two tetrameric hemoglobin molecules. CONCLUSIONS The analyses revealed that αPro50 in the highland hemoglobin variant promoted a stable interaction between αHis45 and heme that was not seen in the αHis50 lowland variant. The αPro50 mutation also altered the nature of atomic contacts at the α1β2/α2β1 intersubunit interfaces. These results demonstrate how affinity-altering changes in intersubunit interactions can be produced by mutations at structurally remote sites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures