5KEM image
Deposition Date 2016-06-09
Release Date 2016-09-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5KEM
Title:
EBOV sGP in complex with variable Fab domains of IgGs c13C6 and BDBV91
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Zaire ebolavirus (Taxon ID: 128952)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ebola secreted glycoprotein
Gene (Uniprot):GP
Chain IDs:E (auth: A), J (auth: F)
Chain Length:232
Number of Molecules:2
Biological Source:Zaire ebolavirus
Polymer Type:polypeptide(L)
Molecule:BDBV91 variable Fab domain heavy chain
Chain IDs:B, G
Chain Length:121
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BDBV91 variable Fab domain light chain
Chain IDs:A (auth: C), F (auth: H)
Chain Length:107
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:c13C6 variable Fab domain heavy chain
Chain IDs:C (auth: D), H (auth: I)
Chain Length:121
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:c13C6 variable Fab domain light chain
Chain IDs:D (auth: E), I (auth: J)
Chain Length:107
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structures of Ebola virus GP and sGP in complex with therapeutic antibodies.
Nat Microbiol 1 16128 16128 (2016)
PMID: 27562261 DOI: 10.1038/nmicrobiol.2016.128

Abstact

The Ebola virus (EBOV) GP gene encodes two glycoproteins. The major product is a soluble, dimeric glycoprotein (sGP) that is secreted abundantly. Despite the abundance of sGP during infection, little is known regarding its structure or functional role. A minor product, resulting from transcriptional editing, is the transmembrane-anchored, trimeric viral surface glycoprotein (GP). GP mediates attachment to and entry into host cells, and is the intended target of antibody therapeutics. Because large portions of sequence are shared between GP and sGP, it has been hypothesized that sGP may potentially subvert the immune response or may contribute to pathogenicity. In this study, we present cryo-electron microscopy structures of GP and sGP in complex with GP-specific and GP/sGP cross-reactive antibodies undergoing human clinical trials. The structure of the sGP dimer presented here, in complex with both an sGP-specific antibody and a GP/sGP cross-reactive antibody, permits us to unambiguously assign the oligomeric arrangement of sGP and compare its structure and epitope presentation to those of GP. We also provide biophysical evaluation of naturally occurring GP/sGP mutations that fall within the footprints identified by our high-resolution structures. Taken together, our data provide a detailed and more complete picture of the accessible Ebolavirus glycoprotein landscape and a structural basis to evaluate patient and vaccine antibody responses towards differently structured products of the GP gene.

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Primary Citation of related structures