5K9T image
Deposition Date 2016-06-01
Release Date 2017-06-07
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5K9T
Title:
SecA-N68, a C-terminal truncation of the SecA ATPase from E. coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein translocase subunit SecA
Mutations:entropy-reducing mutations E55A, K56A, E58A, E196A, and E197A
Chain IDs:A
Chain Length:578
Number of Molecules:1
Biological Source:Escherichia coli (strain 55989 / EAEC)
Primary Citation
An alternate mode of oligomerization for E. coli SecA.
Sci Rep 7 11747 11747 (2017)
PMID: 28924213 DOI: 10.1038/s41598-017-11648-5

Abstact

SecA is the ATPase of preprotein translocase. SecA is a dimer in solution and changes in its oligomeric state may function in preprotein translocation. The SecA-N68 construct, in which the C-terminal helical domains of SecA are deleted, was used to investigate the mechanism of SecA oligomerization. SecA-N68 is in equilibrium between monomers, dimers, and tetramers. Subunit interactions in the SecA-N68 tetramer are mediated entirely by unstructured regions at its N- and C-termini: when the termini are deleted to yield SecA-N68∆NC, the construct is completely monomeric. This monomeric construct yielded crystals diffracting to 2.6 Å that were used to solve the structure of SecA-N68, including the "preprotein crosslinking domain" (PPXD) that was missing from previous E. coli SecA structures. The SecA-N68 structure was combined with small angle X-ray scattering (SAXS) data to construct a model of the SecA-N68 tetramer that is consistent with the essential roles of the extreme N- and C-termini in oligomerization. This mode of oligomerization, which depends on binding of the extreme N-terminus to the DEAD motor domains, NBD1 and NBD2, was used to model a novel parallel and flexible SecA solution dimer that agrees well with SAXS data.

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