5K8E image
Entry Detail
PDB ID:
5K8E
Keywords:
Title:
Xylooligosaccharide oxidase from Myceliophthora thermophila C1
Biological Source:
PDB Version:
Deposition Date:
2016-05-30
Release Date:
2016-09-21
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:FAD linked oxidase-like protein
Chain IDs:A
Chain Length:497
Number of Molecules:1
Biological Source:Myceliophthora thermophila (strain ATCC 42464 / BCRC 31852 / DSM 1799)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
NAG B NAG -D
Primary Citation
Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
J.Biol.Chem. 291 23709 23718 (2016)
PMID: 27629413 DOI: 10.1074/jbc.M116.741173

Abstact

By inspection of the predicted proteome of the fungus Myceliophthora thermophila C1 for vanillyl-alcohol oxidase (VAO)-type flavoprotein oxidases, a putative oligosaccharide oxidase was identified. By homologous expression and subsequent purification, the respective protein could be obtained. The protein was found to contain a bicovalently bound FAD cofactor. By screening a large number of carbohydrates, several mono- and oligosaccharides could be identified as substrates. The enzyme exhibits a strong substrate preference toward xylooligosaccharides; hence it is named xylooligosaccharide oxidase (XylO). Chemical analyses of the product formed upon oxidation of xylobiose revealed that the oxidation occurs at C1, yielding xylobionate as product. By elucidation of several XylO crystal structures (in complex with a substrate mimic, xylose, and xylobiose), the residues that tune the unique substrate specificity and regioselectivity could be identified. The discovery of this novel oligosaccharide oxidase reveals that the VAO-type flavoprotein family harbors oxidases tuned for specific oligosaccharides. The unique substrate profile of XylO hints at a role in the degradation of xylan-derived oligosaccharides by the fungus M. thermophila C1.

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Primary Citation of related structures