5K79 image
Deposition Date 2016-05-25
Release Date 2016-07-20
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5K79
Title:
Structure and anti-HIV activity of CYT-CVNH, a new cyanovirin-n homolog
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cyanovirin-N domain protein
Gene (Uniprot):PCC7424_1905
Chain IDs:A, B
Chain Length:108
Number of Molecules:2
Biological Source:Cyanothece sp. (strain PCC 7424)
Primary Citation
Structure and Glycan Binding of a New Cyanovirin-N Homolog.
J.Biol.Chem. 291 18967 18976 (2016)
PMID: 27402833 DOI: 10.1074/jbc.M116.740415

Abstact

The HIV-1 envelope glycoprotein gp120 is heavily glycosylated and bears numerous high mannose sugars. These sugars can serve as targets for HIV-inactivating compounds, such as antibodies and lectins, which bind to the glycans and interfere with viral entry into the target cell. We determined the 1.6 Å x-ray structure of Cyt-CVNH, a recently identified lectin from the cyanobacterium Cyanothece(7424), and elucidated its glycan specificity by NMR. The Cyt-CVNH structure and glycan recognition profile are similar to those of other CVNH proteins, with each domain specifically binding to Manα(1-2)Manα units on the D1 and D3 arms of high mannose glycans. However, in contrast to CV-N, no cross-linking and precipitation of the cross-linked species in solution was observed upon Man-9 binding, allowing, for the first time, investigation of the interaction of Man-9 with a member of the CVNH family by NMR. HIV assays showed that Cyt-CVNH is able to inhibit HIV-1 with ∼4-fold higher potency than CV-N(P51G), a stabilized version of wild type CV-N. Therefore, Cyt-CVNH may qualify as a valuable lectin for potential microbicidal use.

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