5K6U image
Entry Detail
PDB ID:
5K6U
Keywords:
Title:
Sidekick-1 immunoglobulin domains 1-4, crystal form 1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-05-25
Release Date:
2016-09-28
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Protein sidekick-1
Chain IDs:A
Chain Length:384
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Molecular basis of sidekick-mediated cell-cell adhesion and specificity.
Elife 5 ? ? (2016)
PMID: 27644106 DOI: 10.7554/eLife.19058

Abstact

Sidekick (Sdk) 1 and 2 are related immunoglobulin superfamily cell adhesion proteins required for appropriate synaptic connections between specific subtypes of retinal neurons. Sdks mediate cell-cell adhesion with homophilic specificity that underlies their neuronal targeting function. Here we report crystal structures of Sdk1 and Sdk2 ectodomain regions, revealing similar homodimers mediated by the four N-terminal immunoglobulin domains (Ig1-4), arranged in a horseshoe conformation. These Ig1-4 horseshoes interact in a novel back-to-back orientation in both homodimers through Ig1:Ig2, Ig1:Ig1 and Ig3:Ig4 interactions. Structure-guided mutagenesis results show that this canonical dimer is required for both Sdk-mediated cell aggregation (via trans interactions) and Sdk clustering in isolated cells (via cis interactions). Sdk1/Sdk2 recognition specificity is encoded across Ig1-4, with Ig1-2 conferring the majority of binding affinity and differential specificity. We suggest that competition between cis and trans interactions provides a novel mechanism to sharpen the specificity of cell-cell interactions.

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Primary Citation of related structures