5K6A image
Entry Detail
PDB ID:
5K6A
Keywords:
Title:
Trypanosoma brucei Pteridine reductase 1 (PTR1) in complex with compound 1
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2016-05-24
Release Date:
2017-03-22
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Pteridine reductase
Chain IDs:A, B, D
Chain Length:288
Number of Molecules:3
Biological Source:Trypanosoma brucei brucei
Polymer Type:polypeptide(L)
Description:Pteridine reductase
Chain IDs:C
Chain Length:288
Number of Molecules:1
Biological Source:Trypanosoma brucei brucei
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSX A CYS modified residue
OCS C CYS modified residue
Primary Citation
Chroman-4-One Derivatives Targeting Pteridine Reductase 1 and Showing Anti-Parasitic Activity.
Molecules 22 ? ? (2017)
PMID: 28282886 DOI: 10.3390/molecules22030426

Abstact

Flavonoids have previously been identified as antiparasitic agents and pteridine reductase 1 (PTR1) inhibitors. Herein, we focus our attention on the chroman-4-one scaffold. Three chroman-4-one analogues (1-3) of previously published chromen-4-one derivatives were synthesized and biologically evaluated against parasitic enzymes (Trypanosoma brucei PTR1-TbPTR1 and Leishmania major-LmPTR1) and parasites (Trypanosoma brucei and Leishmania infantum). A crystal structure of TbPTR1 in complex with compound 1 and the first crystal structures of LmPTR1-flavanone complexes (compounds 1 and 3) were solved. The inhibitory activity of the chroman-4-one and chromen-4-one derivatives was explained by comparison of observed and predicted binding modes of the compounds. Compound 1 showed activity both against the targeted enzymes and the parasites with a selectivity index greater than 7 and a low toxicity. Our results provide a basis for further scaffold optimization and structure-based drug design aimed at the identification of potent anti-trypanosomatidic compounds targeting multiple PTR1 variants.

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Primary Citation of related structures