5K5G image
Entry Detail
PDB ID:
5K5G
Keywords:
Title:
Structure of human islet amyloid polypeptide in complex with an engineered binding protein
Biological Source:
PDB Version:
Deposition Date:
2016-05-23
Release Date:
2016-10-26
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Islet amyloid polypeptide
Chain IDs:A
Chain Length:37
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:HI18
Chain IDs:B, C
Chain Length:69
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
beta-Hairpin of Islet Amyloid Polypeptide Bound to an Aggregation Inhibitor.
Sci Rep 6 33474 33474 (2016)
PMID: 27641459 DOI: 10.1038/srep33474

Abstact

In type 2 diabetes, the formation of islet amyloid consisting of islet amyloid polypeptide (IAPP) is associated with reduction in β-cell mass and contributes to the failure of islet cell transplantation. Rational design of inhibitors of IAPP amyloid formation has therapeutic potential, but is hampered by the lack of structural information on inhibitor complexes of the conformationally flexible, aggregation-prone IAPP. Here we characterize a β-hairpin conformation of IAPP in complex with the engineered binding protein β-wrapin HI18. The β-strands correspond to two amyloidogenic motifs, 12-LANFLVH-18 and 22-NFGAILS-28, which are connected by a turn established around Ser-20. Besides backbone hydrogen bonding, the IAPP:HI18 interaction surface is dominated by non-polar contacts involving hydrophobic side chains of the IAPP β-strands. Apart from monomers, HI18 binds oligomers and fibrils and inhibits IAPP aggregation and toxicity at low substoichiometric concentrations. The IAPP β-hairpin can serve as a molecular recognition motif enabling control of IAPP aggregation.

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Primary Citation of related structures