5K30 image
Deposition Date 2016-05-19
Release Date 2017-07-12
Last Version Date 2024-01-10
Entry Detail
PDB ID:
5K30
Keywords:
Title:
Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by S-Ethyl-L-cysteine sulfoxide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.59 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methionine gamma-lyase
Gene (Uniprot):megL
Chain IDs:A
Chain Length:398
Number of Molecules:1
Biological Source:Citrobacter freundii
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SCS A CYS modified residue
Primary Citation
Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie 168 190 197 (2020)
PMID: 31711941 DOI: 10.1016/j.biochi.2019.11.004

Abstact

Interactions of Citrobacter freundii methionine γ-lyase (MGL) with sulfoxides of typical substrates were investigated. It was found that sulfoxides are suicide substrates of the enzyme. The products of the β- and γ-elimination reactions of sulfoxides, thiosulfinates, oxidize three cysteine residues of the enzyme. Three-dimensional structures of MGL inactivated by dimethyl thiosulfinate and diethyl thiosulfinate were determined at 1.46 Å and 1.59 Å resolution. Analysis of the structures identified SH groups oxidized by thiosulfinates and revealed the structural bases of MGL inactivation. The extent of inactivation of MGL in the catalysis of the β-elimination reaction depends on the length of the «tail» at oxidized Cys115. Oxidation of Cys115 results in MGL incapable to catalyze the stage of methyl mercaptan elimination of the physiological reaction.

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Primary Citation of related structures