5K2F image
Deposition Date 2016-05-18
Release Date 2016-09-14
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5K2F
Keywords:
Title:
Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.00 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Eukaryotic peptide chain release factor GTP-binding subunit
Gene (Uniprot):SUP35
Chain IDs:A
Chain Length:6
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Ab initio structure determination from prion nanocrystals at atomic resolution by MicroED.
Proc.Natl.Acad.Sci.USA 113 11232 11236 (2016)
PMID: 27647903 DOI: 10.1073/pnas.1606287113

Abstact

Electrons, because of their strong interaction with matter, produce high-resolution diffraction patterns from tiny 3D crystals only a few hundred nanometers thick in a frozen-hydrated state. This discovery offers the prospect of facile structure determination of complex biological macromolecules, which cannot be coaxed to form crystals large enough for conventional crystallography or cannot easily be produced in sufficient quantities. Two potential obstacles stand in the way. The first is a phenomenon known as dynamical scattering, in which multiple scattering events scramble the recorded electron diffraction intensities so that they are no longer informative of the crystallized molecule. The second obstacle is the lack of a proven means of de novo phase determination, as is required if the molecule crystallized is insufficiently similar to one that has been previously determined. We show with four structures of the amyloid core of the Sup35 prion protein that, if the diffraction resolution is high enough, sufficiently accurate phases can be obtained by direct methods with the cryo-EM method microelectron diffraction (MicroED), just as in X-ray diffraction. The success of these four experiments dispels the concern that dynamical scattering is an obstacle to ab initio phasing by MicroED and suggests that structures of novel macromolecules can also be determined by direct methods.

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