5K2A image
Deposition Date 2016-05-18
Release Date 2016-09-21
Last Version Date 2024-10-09
Entry Detail
PDB ID:
5K2A
Title:
2.5 angstrom A2a adenosine receptor structure with sulfur SAD phasing using XFEL data
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adenosine receptor A2a/Soluble cytochrome b562 chimera
Gene (Uniprot):cybC, ADORA2A
Chain IDs:A
Chain Length:447
Number of Molecules:1
Biological Source:Homo sapiens, Escherichia coli
Primary Citation
Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.
Sci Adv 2 e1600292 e1600292 (2016)
PMID: 27679816 DOI: 10.1126/sciadv.1600292

Abstact

Serial femtosecond crystallography (SFX) takes advantage of extremely bright and ultrashort pulses produced by x-ray free-electron lasers (XFELs), allowing for the collection of high-resolution diffraction intensities from micrometer-sized crystals at room temperature with minimal radiation damage, using the principle of "diffraction-before-destruction." However, de novo structure factor phase determination using XFELs has been difficult so far. We demonstrate the ability to solve the crystallographic phase problem for SFX data collected with an XFEL using the anomalous signal from native sulfur atoms, leading to a bias-free room temperature structure of the human A2A adenosine receptor at 1.9 Å resolution. The advancement was made possible by recent improvements in SFX data analysis and the design of injectors and delivery media for streaming hydrated microcrystals. This general method should accelerate structural studies of novel difficult-to-crystallize macromolecules and their complexes.

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