5K0R image
Entry Detail
PDB ID:
5K0R
Keywords:
Title:
Crystal structure of reduced Shewanella Yellow Enzyme 4 (SYE4)
Biological Source:
PDB Version:
Deposition Date:
2016-05-17
Release Date:
2017-06-07
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NAD(P)H:flavin oxidoreductase Sye4
Chain IDs:A
Chain Length:355
Number of Molecules:1
Biological Source:Shewanella oneidensis (strain MR-1)
Primary Citation
Structural dissection of Shewanella oneidensis old yellow enzyme 4 bound to a Meisenheimer complex and (nitro)phenolic ligands.
FEBS Lett. 591 3391 3401 (2017)
PMID: 28869767 DOI: 10.1002/1873-3468.12833

Abstact

Shewanella oneidensis, a Gram-negative γ-proteobacterium with an extensive redox capacity, possesses four old yellow enzyme (OYE) homologs. Of these, Shewanella yellow enzyme 4 (SYE4) is implicated in resistance to oxidative stress. Here, we present a series of high-resolution crystal structures for SYE4 in the oxidized and reduced states, and in complex with phenolic ligands and the nitro-aromatic explosive picric acid. The structures unmask new features, including the identification of a binding platform for long-chain hydrophobic molecules. Furthermore, we present the first structural observation of a hydride-Meisenheimer complex of picric acid with a flavoenzyme. Overall, our study exposes the binding promiscuity of SYE4 toward a variety of electrophilic substrates and is consistent with a general detoxification function for SYE4.

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