5JZ7 image
Deposition Date 2016-05-16
Release Date 2017-01-11
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5JZ7
Title:
NGF IN COMPLEX WITH MEDI578 scFv
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.26
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-nerve growth factor
Gene (Uniprot):NGF
Chain IDs:A, B, E, F
Chain Length:110
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:MEDI578 scFv, heavy chain
Chain IDs:C, G, H, J
Chain Length:130
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:MEDI578 scFv, light chain
Chain IDs:D, I, K, L
Chain Length:122
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Engineering the surface properties of a human monoclonal antibody prevents self-association and rapid clearance in vivo.
Sci Rep 6 38644 38644 (2016)
PMID: 27995962 DOI: 10.1038/srep38644

Abstact

Uncontrolled self-association is a major challenge in the exploitation of proteins as therapeutics. Here we describe the development of a structural proteomics approach to identify the amino acids responsible for aberrant self-association of monoclonal antibodies and the design of a variant with reduced aggregation and increased serum persistence in vivo. We show that the human monoclonal antibody, MEDI1912, selected against nerve growth factor binds with picomolar affinity, but undergoes reversible self-association and has a poor pharmacokinetic profile in both rat and cynomolgus monkeys. Using hydrogen/deuterium exchange and cross-linking-mass spectrometry we map the residues responsible for self-association of MEDI1912 and show that disruption of the self-interaction interface by three mutations enhances its biophysical properties and serum persistence, whilst maintaining high affinity and potency. Immunohistochemistry suggests that this is achieved via reduction of non-specific tissue binding. The strategy developed represents a powerful and generic approach to improve the properties of therapeutic proteins.

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Primary Citation of related structures