5JVV image
Deposition Date 2016-05-11
Release Date 2016-12-14
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5JVV
Keywords:
Title:
Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.59 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:beta-1,3-glucosyltransferase
Chain IDs:A (auth: B), B (auth: A)
Chain Length:298
Number of Molecules:2
Biological Source:Paecilomyces sp. J18
Primary Citation
Catalytic Mechanism of a Novel Glycoside Hydrolase Family 16 "Elongating" beta-Transglycosylase
J. Biol. Chem. 292 1666 1678 (2017)
PMID: 27956553 DOI: 10.1074/jbc.M116.762419

Abstact

Carbohydrates are complex macromolecules in biological metabolism. Enzymatic synthesis of carbohydrates is recognized as a powerful tool to overcome the problems associated with large scale synthesis of carbohydrates. Novel enzymes with significant transglycosylation ability are still in great demand in glycobiology studies. Here we report a novel glycoside hydrolase family 16 "elongating" β-transglycosylase from Paecilomyces thermophila (PtBgt16A), which efficiently catalyzes the synthesis of higher polymeric oligosaccharides using β-1,3/1,4-oligosaccharides as donor/acceptor substrates. Further structural information reveals that PtBgt16A has a binding pocket around the -1 subsite. The catalytic mechanism of PtBgt16A is partly similar to an exo-glycoside hydrolase, which cleaves the substrate from the non-reducing end one by one. However, PtBgt16A releases the reducing end product and uses the remainder glucosyl as a transglycosylation donor. This catalytic mechanism has similarity with the catalytic mode of amylosucrase, which catalyzes the transglycosylation products gradually extend by one glucose unit. PtBgt16A thus has the potential to be a tool enzyme for the enzymatic synthesis of new β-oligosaccharides and glycoconjugates.

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