5JS9 image
Deposition Date 2016-05-07
Release Date 2016-07-13
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5JS9
Title:
Uncleaved prefusion optimized gp140 trimer with an engineered 8-residue HR1 turn bound to broadly neutralizing antibodies 8ANC195 and PGT128
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.92 Å
R-Value Free:
0.32
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
I 2 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:broadly neutralizing antibody PGT128 heavy chain
Chain IDs:A
Chain Length:239
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:broadly neutralizing antibody PGT128 light chain
Chain IDs:B
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:gp120
Chain IDs:C
Chain Length:480
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:gp41
Chain IDs:D
Chain Length:140
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:broadly neutralizing antibody 8ANC195 heavy chain
Chain IDs:E
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:broadly neutralizing antibody 8ANC195 light chain
Chain IDs:F
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability.
Nat Commun 7 12040 12040 (2016)
PMID: 27349805 DOI: 10.1038/ncomms12040

Abstact

The trimeric HIV-1 envelope glycoprotein (Env) is critical for host immune recognition and neutralization. Despite advances in trimer design, the roots of Env trimer metastability remain elusive. Here we investigate the contribution of two Env regions to metastability. First, we computationally redesign a largely disordered bend in heptad region 1 (HR1) of SOSIP trimers that connects the long, central HR1 helix to the fusion peptide, substantially improving the yield of soluble, well-folded trimers. Structural and antigenic analyses of two distinct HR1 redesigns confirm that redesigned Env closely mimics the native, prefusion trimer with a more stable gp41. Next, we replace the cleavage site between gp120 and gp41 with various linkers in the context of an HR1 redesign. Electron microscopy reveals a potential fusion intermediate state for uncleaved trimers containing short but not long linkers. Together, these results outline a general approach for stabilization of Env trimers from diverse HIV-1 strains.

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Primary Citation of related structures