5JRF image
Entry Detail
PDB ID:
5JRF
Title:
Crystal structure of the light-driven sodium pump KR2 bound with iodide ions
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-05-06
Release Date:
2017-05-31
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Sodium pumping rhodopsin
Chain IDs:A
Chain Length:288
Number of Molecules:1
Biological Source:Dokdonia eikasta
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LYR A LYS modified residue
Primary Citation
Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv 3 e1602952 e1602952 (2017)
PMID: 28508075 DOI: 10.1126/sciadv.1602952

Abstact

We describe a fast, easy, and potentially universal method for the de novo solution of the crystal structures of membrane proteins via iodide-single-wavelength anomalous diffraction (I-SAD). The potential universality of the method is based on a common feature of membrane proteins-the availability at the hydrophobic-hydrophilic interface of positively charged amino acid residues with which iodide strongly interacts. We demonstrate the solution using I-SAD of four crystal structures representing different classes of membrane proteins, including a human G protein-coupled receptor (GPCR), and we show that I-SAD can be applied using data collection strategies based on either standard or serial x-ray crystallography techniques.

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Primary Citation of related structures