5JRB image
Deposition Date 2016-05-06
Release Date 2016-08-10
Last Version Date 2023-11-08
Entry Detail
PDB ID:
5JRB
Title:
Rad52(1-212) K102A/K133A/E202A mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA repair protein RAD52 homolog
Gene (Uniprot):RAD52
Mutagens:K102A, K133A, E202A
Chain IDs:A, B, C, D, E, F, G, H, I, J, K
Chain Length:215
Number of Molecules:11
Biological Source:Homo sapiens
Primary Citation
Structure of the human DNA-repair protein RAD52 containing surface mutations.
Acta Crystallogr.,Sect.F 72 598 603 (2016)
PMID: 27487923 DOI: 10.1107/S2053230X1601027X

Abstact

The Rad52 protein is a eukaryotic single-strand DNA-annealing protein that is involved in the homologous recombinational repair of DNA double-strand breaks. The isolated N-terminal half of the human RAD52 protein (RAD52(1-212)) forms an undecameric ring structure with a surface that is mostly positively charged. In the present study, it was found that RAD52(1-212) containing alanine mutations of the charged surface residues (Lys102, Lys133 and Glu202) is highly amenable to crystallization. The structure of the mutant RAD52(1-212) was solved at 2.4 Å resolution. The structure revealed an association between the symmetry-related RAD52(1-212) rings, in which a partially unfolded, C-terminal region of RAD52 extended into the DNA-binding groove of the neighbouring ring in the crystal. The alanine mutations probably reduced the surface entropy of the RAD52(1-212) ring and stabilized the ring-ring association observed in the crystal.

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Primary Citation of related structures