5JNX image
Deposition Date 2016-05-01
Release Date 2016-06-15
Last Version Date 2024-10-30
Entry Detail
PDB ID:
5JNX
Title:
The 6.6 A cryo-EM structure of the full-length human NPC1 in complex with the cleaved glycoprotein of Ebola virus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.56 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Niemann-Pick C1 protein
Gene (Uniprot):NPC1
Chain IDs:A
Chain Length:1278
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein
Gene (Uniprot):GP
Mutations:T42V
Chain IDs:B (auth: C), D (auth: E), F (auth: G)
Chain Length:158
Number of Molecules:3
Biological Source:Ebola virus - Zaire (1995)
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein
Gene (Uniprot):GP
Chain IDs:C (auth: D), E (auth: F), G (auth: H)
Chain Length:130
Number of Molecules:3
Biological Source:Ebola virus - Zaire (1995)
Ligand Molecules
Primary Citation
Structural Insights into the Niemann-Pick C1 (NPC1)-Mediated Cholesterol Transfer and Ebola Infection
Cell 165 1467 1478 (2016)
PMID: 27238017 DOI: 10.1016/j.cell.2016.05.022

Abstact

Niemann-Pick disease type C (NPC) is associated with mutations in NPC1 and NPC2, whose gene products are key players in the endosomal/lysosomal egress of low-density lipoprotein-derived cholesterol. NPC1 is also the intracellular receptor for Ebola virus (EBOV). Here, we present a 4.4 Å structure of full-length human NPC1 and a low-resolution reconstruction of NPC1 in complex with the cleaved glycoprotein (GPcl) of EBOV, both determined by single-particle electron cryomicroscopy. NPC1 contains 13 transmembrane segments (TMs) and three distinct lumenal domains A (also designated NTD), C, and I. TMs 2-13 exhibit a typical resistance-nodulation-cell division fold, among which TMs 3-7 constitute the sterol-sensing domain conserved in several proteins involved in cholesterol metabolism and signaling. A trimeric EBOV-GPcl binds to one NPC1 monomer through the domain C. Our structural and biochemical characterizations provide an important framework for mechanistic understanding of NPC1-mediated intracellular cholesterol trafficking and Ebola virus infection.

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Primary Citation of related structures