5JNB image
Entry Detail
PDB ID:
5JNB
Keywords:
Title:
structure of GLD-2/RNP-8 complex
Biological Source:
PDB Version:
Deposition Date:
2016-04-29
Release Date:
2016-06-22
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Poly(A) RNA polymerase gld-2
Mutations:D668A
Chain IDs:A, B, C, D
Chain Length:338
Number of Molecules:4
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Description:RNP (RRM RNA binding domain) containing
Chain IDs:E, F, G, H
Chain Length:74
Number of Molecules:4
Biological Source:Caenorhabditis elegans
Primary Citation
Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity.
Rna 22 1139 1145 (2016)
PMID: 27288313 DOI: 10.1261/rna.056598.116

Abstact

Cytoplasmic polyadenylation drives the translational activation of specific mRNAs in early metazoan development and is performed by distinct complexes that share the same catalytic poly(A)-polymerase subunit, GLD-2. The activity and specificity of GLD-2 depend on its binding partners. In Caenorhabditis elegans, GLD-2 promotes spermatogenesis when bound to GLD-3 and oogenesis when bound to RNP-8. GLD-3 and RNP-8 antagonize each other and compete for GLD-2 binding. Following up on our previous mechanistic studies of GLD-2-GLD-3, we report here the 2.5 Å resolution structure and biochemical characterization of a GLD-2-RNP-8 core complex. In the structure, RNP-8 embraces the poly(A)-polymerase, docking onto several conserved hydrophobic hotspots present on the GLD-2 surface. RNP-8 stabilizes GLD-2 and indirectly stimulates polyadenylation. RNP-8 has a different amino-acid sequence and structure as compared to GLD-3. Yet, it binds the same surfaces of GLD-2 by forming alternative interactions, rationalizing the remarkable versatility of GLD-2 complexes.

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