5JJ3 image
Deposition Date 2016-04-22
Release Date 2017-02-08
Last Version Date 2023-09-27
Entry Detail
PDB ID:
5JJ3
Keywords:
Title:
Refined Structure of the Mature Virion Conformation of P22 Portal Protein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.00 Å
R-Value Free:
0.25
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):1
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:725
Number of Molecules:12
Biological Source:Enterobacteria phage P22
Ligand Molecules
Primary Citation
Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation.
Nat Commun 8 14310 14310 (2017)
PMID: 28134243 DOI: 10.1038/ncomms14310

Abstact

Tailed bacteriophages and herpesviruses assemble infectious particles via an empty precursor capsid (or 'procapsid') built by multiple copies of coat and scaffolding protein and by one dodecameric portal protein. Genome packaging triggers rearrangement of the coat protein and release of scaffolding protein, resulting in dramatic procapsid lattice expansion. Here, we provide structural evidence that the portal protein of the bacteriophage P22 exists in two distinct dodecameric conformations: an asymmetric assembly in the procapsid (PC-portal) that is competent for high affinity binding to the large terminase packaging protein, and a symmetric ring in the mature virion (MV-portal) that has negligible affinity for the packaging motor. Modelling studies indicate the structure of PC-portal is incompatible with DNA coaxially spooled around the portal vertex, suggesting that newly packaged DNA triggers the switch from PC- to MV-conformation. Thus, we propose the signal for termination of 'Headful Packaging' is a DNA-dependent symmetrization of portal protein.

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Primary Citation of related structures