5JIP image
Entry Detail
PDB ID:
5JIP
Keywords:
Title:
Crystal structure of the Clostridium perfringens spore cortex lytic enzyme SleM
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-04-22
Release Date:
2016-08-10
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cortical-lytic enzyme
Chain IDs:A, B
Chain Length:332
Number of Molecules:2
Biological Source:Clostridium perfringens
Primary Citation
The crystal structure of Clostridium perfringens SleM, a muramidase involved in cortical hydrolysis during spore germination.
Proteins 84 1681 1689 (2016)
PMID: 27488615 DOI: 10.1002/prot.25112

Abstact

Clostridium perfringens spores employ two peptidoglycan lysins to degrade the spore cortex during germination. SleC initiates cortex hydrolysis to generate cortical fragments that are degraded further by the muramidase SleM. Here, we present the crystal structure of the C. perfringens S40 SleM protein at 1.8 Å. SleM comprises an N-terminal catalytic domain that adopts an irregular α/β-barrel fold that is common to GH25 family lysozymes, plus a C-terminal fibronectin type III domain. The latter is involved in forming the SleM dimer that is evident in both the crystal structure and in solution. A truncated form of SleM that lacks the FnIII domain shows reduced activity against spore sacculi indicating that this domain may have a role in facilitating the position of substrate with respect to the enzyme's active site. Proteins 2016; 84:1681-1689. © 2016 Wiley Periodicals, Inc.

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