5JAD image
Entry Detail
PDB ID:
5JAD
Keywords:
Title:
Compound binding to Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2)discovered through fragment screening
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-04-12
Release Date:
2016-05-25
Method Details:
Experimental Method:
Resolution:
2.05 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Platelet-activating factor acetylhydrolase
Chain IDs:A
Chain Length:388
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Exploitation of a Novel Binding Pocket in Human Lipoprotein-Associated Phospholipase A2 (Lp-PLA2) Discovered through X-ray Fragment Screening.
J.Med.Chem. 59 5356 5367 (2016)
PMID: 27167608 DOI: 10.1021/acs.jmedchem.6b00212

Abstact

Elevated levels of human lipoprotein-associated phospholipase A2 (Lp-PLA2) are associated with cardiovascular disease and dementia. A fragment screen was conducted against Lp-PLA2 in order to identify novel inhibitors. Multiple fragment hits were observed in different regions of the active site, including some hits that bound in a pocket created by movement of a protein side chain (approximately 13 Å from the catalytic residue Ser273). Using structure guided design, we optimized a fragment that bound in this pocket to generate a novel low nanomolar chemotype, which did not interact with the catalytic residues.

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