5J9K image
Deposition Date 2016-04-10
Release Date 2017-07-05
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5J9K
Keywords:
Title:
Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) in complex with rice D53 repressor EAR peptide motif
Biological Source:
Source Organism:
Oryza sativa (Taxon ID: 4530)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein TPR1
Gene (Uniprot):TPR1
Chain IDs:A, B
Chain Length:209
Number of Molecules:2
Biological Source:Oryza sativa
Polymer Type:polypeptide(L)
Molecule:rice D53 peptide 794-808
Chain IDs:C, D
Chain Length:15
Number of Molecules:2
Biological Source:Oryza sativa
Ligand Molecules
Primary Citation
A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.
Sci Adv 3 e1601217 e1601217 (2017)
PMID: 28630893 DOI: 10.1126/sciadv.1601217

Abstact

TOPLESS are tetrameric plant corepressors of the conserved Tup1/Groucho/TLE (transducin-like enhancer of split) family. We show that they interact through their TOPLESS domains (TPDs) with two functionally important ethylene response factor-associated amphiphilic repression (EAR) motifs of the rice strigolactone signaling repressor D53: the universally conserved EAR-3 and the monocot-specific EAR-2. We present the crystal structure of the monocot-specific EAR-2 peptide in complex with the TOPLESS-related protein 2 (TPR2) TPD, in which the EAR-2 motif binds the same TPD groove as jasmonate and auxin signaling repressors but makes additional contacts with a second TPD site to mediate TPD tetramer-tetramer interaction. We validated the functional relevance of the two TPD binding sites in reporter gene assays and in transgenic rice and demonstrate that EAR-2 binding induces TPD oligomerization. Moreover, we demonstrate that the TPD directly binds nucleosomes and the tails of histones H3 and H4. Higher-order assembly of TPD complexes induced by EAR-2 binding markedly stabilizes the nucleosome-TPD interaction. These results establish a new TPD-repressor binding mode that promotes TPD oligomerization and TPD-nucleosome interaction, thus illustrating the initial assembly of a repressor-corepressor-nucleosome complex.

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Primary Citation of related structures