5J8X image
Deposition Date 2016-04-08
Release Date 2016-08-17
Last Version Date 2024-10-23
Entry Detail
PDB ID:
5J8X
Keywords:
Title:
CRYSTAL STRUCTURE OF E. COLI PBP5 WITH 2C
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.53 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:D-alanyl-D-alanine carboxypeptidase DacA
Gene (Uniprot):dacA
Chain IDs:A
Chain Length:387
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structural basis of metallo-beta-lactamase, serine-beta-lactamase and penicillin-binding protein inhibition by cyclic boronates.
Nat Commun 7 12406 12406 (2016)
PMID: 27499424 DOI: 10.1038/ncomms12406

Abstact

β-Lactamases enable resistance to almost all β-lactam antibiotics. Pioneering work revealed that acyclic boronic acids can act as 'transition state analogue' inhibitors of nucleophilic serine enzymes, including serine-β-lactamases. Here we report biochemical and biophysical analyses revealing that cyclic boronates potently inhibit both nucleophilic serine and zinc-dependent β-lactamases by a mechanism involving mimicking of the common tetrahedral intermediate. Cyclic boronates also potently inhibit the non-essential penicillin-binding protein PBP 5 by the same mechanism of action. The results open the way for development of dual action inhibitors effective against both serine- and metallo-β-lactamases, and which could also have antimicrobial activity through inhibition of PBPs.

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Primary Citation of related structures