5J89 image
Deposition Date 2016-04-07
Release Date 2016-04-27
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5J89
Keywords:
Title:
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Programmed cell death 1 ligand 1
Gene (Uniprot):CD274
Chain IDs:A (auth: C), B (auth: A), C (auth: D), D (auth: B)
Chain Length:144
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural basis for small molecule targeting of the programmed death ligand 1 (PD-L1).
Oncotarget 7 30323 30335 (2016)
PMID: 27083005 DOI: 10.18632/oncotarget.8730

Abstact

Targeting the PD-1/PD-L1 immunologic checkpoint with monoclonal antibodies has provided unprecedented results in cancer treatment in the recent years. Development of chemical inhibitors for this pathway lags the antibody development because of insufficient structural information. The first nonpeptidic chemical inhibitors that target the PD-1/PD-L1 interaction have only been recently disclosed by Bristol-Myers Squibb. Here, we show that these small-molecule compounds bind directly to PD-L1 and that they potently block PD-1 binding. Structural studies reveal a dimeric protein complex with a single small molecule which stabilizes the dimer thus occluding the PD-1 interaction surface of PD-L1s. The small-molecule interaction "hot spots" on PD-L1 surfaces suggest approaches for the PD-1/PD-L1 antagonist drug discovery.

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Primary Citation of related structures