5J7A image
Deposition Date 2016-04-06
Release Date 2016-08-31
Last Version Date 2024-11-13
Entry Detail
PDB ID:
5J7A
Title:
Bacteriorhodopsin ground state structure obtained with Serial Femtosecond Crystallography
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bacteriorhodopsin
Gene (Uniprot):bop
Chain IDs:A
Chain Length:227
Number of Molecules:1
Biological Source:Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Primary Citation

Abstact

Serial femtosecond crystallography (SFX) using X-ray free-electron laser sources is an emerging method with considerable potential for time-resolved pump-probe experiments. Here we present a lipidic cubic phase SFX structure of the light-driven proton pump bacteriorhodopsin (bR) to 2.3 Å resolution and a method to investigate protein dynamics with modest sample requirement. Time-resolved SFX (TR-SFX) with a pump-probe delay of 1 ms yields difference Fourier maps compatible with the dark to M state transition of bR. Importantly, the method is very sample efficient and reduces sample consumption to about 1 mg per collected time point. Accumulation of M intermediate within the crystal lattice is confirmed by time-resolved visible absorption spectroscopy. This study provides an important step towards characterizing the complete photocycle dynamics of retinal proteins and demonstrates the feasibility of a sample efficient viscous medium jet for TR-SFX.

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