5J58 image
Entry Detail
PDB ID:
5J58
Title:
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 1856)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2016-04-01
Release Date:
2017-01-25
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Methionyl-tRNA synthetase, putative
Mutations:A309T, K452A, K453R, E454A, A499V, S503N
Chain IDs:A, B
Chain Length:542
Number of Molecules:2
Biological Source:Trypanosoma brucei brucei
Primary Citation
Structure-guided design of novel Trypanosoma brucei Methionyl-tRNA synthetase inhibitors.
Eur J Med Chem 124 1081 1092 (2016)
PMID: 27788467 DOI: 10.1016/j.ejmech.2016.10.024

Abstact

A screening hit 1 against Trypanosoma brucei methionyl-tRNA synthetase was optimized using a structure-guided approach. The optimization led to the identification of two novel series of potent inhibitors, the cyclic linker and linear linker series. Compounds of both series were potent in a T. brucei growth inhibition assay while showing low toxicity to mammalian cells. The best compound of each series, 16 and 31, exhibited EC50s of 39 and 22 nM, respectively. Compounds 16 and 31 also exhibited promising PK properties after oral dosing in mice. Moreover, compound 31 had moderately good brain permeability, with a brain/plasma ratio of 0.27 at 60 min after IP injection. This study provides new lead compounds for arriving at new treatments of human African trypanosomiasis (HAT).

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Primary Citation of related structures