5J3H image
Deposition Date 2016-03-30
Release Date 2016-06-15
Last Version Date 2024-10-16
Entry Detail
PDB ID:
5J3H
Title:
Human insulin receptor domains L1-CR in complex with peptide S519C16 and 83-7 Fv
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Endothia gyrosa (Taxon ID: 40263)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.27 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peptide S519C16
Chain IDs:A (auth: B)
Chain Length:16
Number of Molecules:1
Biological Source:Endothia gyrosa
Polymer Type:polypeptide(L)
Molecule:mAb 83-7 Fab heavy chain
Chain IDs:B (auth: C)
Chain Length:123
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:mAb 83-7 Fab light chain
Chain IDs:C (auth: D)
Chain Length:118
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Insulin receptor
Gene (Uniprot):INSR
Chain IDs:D (auth: E)
Chain Length:317
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Insulin Mimetic Peptide Disrupts the Primary Binding Site of the Insulin Receptor.
J.Biol.Chem. 291 15473 15481 (2016)
PMID: 27281820 DOI: 10.1074/jbc.M116.732180

Abstact

Sets of synthetic peptides that interact with the insulin receptor ectodomain have been discovered by phage display and reported in the literature. These peptides were grouped into three classes termed Site 1, Site 2, and Site 3 based on their mutual competition of binding to the receptor. Further refinement has yielded, in particular, a 36-residue Site 2-Site 1 fusion peptide, S519, that binds the insulin receptor with subnanomolar affinity and exhibits agonist activity in both lipogenesis and glucose uptake assays. Here, we report three-dimensional crystallographic detail of the interaction of the C-terminal, 16-residue Site 1 component (S519C16) of S519 with the first leucine-rich repeat domain (L1) of the insulin receptor. Our structure shows that S519C16 binds to the same site on the L1 surface as that occupied by a critical component of the primary binding site, namely the helical C-terminal segment of the insulin receptor α-chain (termed αCT). In particular, the two phenylalanine residues within the FYXWF motif of S519C16 are seen to engage the insulin receptor L1 domain surface in a fashion almost identical to the respective αCT residues Phe(701) and Phe(705) The structure provides a platform for the further development of peptidic and/or small molecule agents directed toward the insulin receptor and/or the type 1 insulin-like growth factor receptor.

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Primary Citation of related structures