5J37 image
Entry Detail
PDB ID:
5J37
Keywords:
Title:
Crystal structure of 60-mer BFDV Capsid Protein in complex with single stranded DNA
Biological Source:
PDB Version:
Deposition Date:
2016-03-30
Release Date:
2016-05-04
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
F 4 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beak and feather disease virus capsid protein
Chain IDs:A (auth: E), C (auth: A), E (auth: B), G (auth: C), I (auth: D)
Chain Length:257
Number of Molecules:5
Biological Source:Beak and feather disease virus
Polymer Type:polydeoxyribonucleotide
Description:single stranded DNA
Chain IDs:B (auth: F), D (auth: G), F (auth: H), H (auth: I), J
Chain Length:30
Number of Molecules:5
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Structural insights into the assembly and regulation of distinct viral capsid complexes.
Nat Commun 7 13014 13014 (2016)
PMID: 27698405 DOI: 10.1038/ncomms13014

Abstact

The assembly and regulation of viral capsid proteins into highly ordered macromolecular complexes is essential for viral replication. Here, we utilize crystal structures of the capsid protein from the smallest and simplest known viruses capable of autonomously replicating in animal cells, circoviruses, to establish structural and mechanistic insights into capsid morphogenesis and regulation. The beak and feather disease virus, like many circoviruses, encode only two genes: a capsid protein and a replication initiation protein. The capsid protein forms distinct macromolecular assemblies during replication and here we elucidate these structures at high resolution, showing that these complexes reverse the exposure of the N-terminal arginine rich domain responsible for DNA binding and nuclear localization. We show that assembly of these complexes is regulated by single-stranded DNA (ssDNA), and provide a structural basis of capsid assembly around single-stranded DNA, highlighting novel binding interfaces distinct from the highly positively charged N-terminal ARM domain.

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Primary Citation of related structures