5J2U image
Deposition Date 2016-03-30
Release Date 2016-08-17
Last Version Date 2024-11-20
Entry Detail
PDB ID:
5J2U
Keywords:
Title:
Tubulin-MMAF complex
Biological Source:
Source Organism:
Rattus norvegicus (Taxon ID: 10116)
Gallus gallus (Taxon ID: 9031)
synthetic construct (Taxon ID: 32630)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1B chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2B chain
Gene (Uniprot):TUBB2B
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:Stathmin-4
Gene (Uniprot):Stmn4
Chain IDs:E
Chain Length:143
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2B chain
Chain IDs:F
Chain Length:384
Number of Molecules:1
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Molecule:Monomethyl auristatin F (MMAF)
Chain IDs:G, H
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
Structural Basis of Microtubule Destabilization by Potent Auristatin Anti-Mitotics.
Plos One 11 e0160890 e0160890 (2016)
PMID: 27518442 DOI: 10.1371/journal.pone.0160890

Abstact

The auristatin class of microtubule destabilizers are highly potent cytotoxic agents against several cancer cell types when delivered as antibody drug conjugates. Here we describe the high resolution structures of tubulin in complex with both monomethyl auristatin E and F and unambiguously define the trans-configuration of both ligands at the Val-Dil amide bond in their tubulin bound state. Moreover, we illustrate how peptidic vinca-site agents carrying terminal carboxylate residues may exploit an observed extended hydrogen bond network with the M-loop Arg278 to greatly improve the affinity of the corresponding analogs and to maintain the M-loop in an incompatible conformation for productive lateral tubulin-tubulin contacts in microtubules. Our results highlight a potential, previously undescribed molecular mechanism by which peptidic vinca-site agents maintain unparalleled potency as microtubule-destabilizing agents.

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Primary Citation of related structures