5J0A image
Deposition Date 2016-03-28
Release Date 2016-09-07
Last Version Date 2024-03-20
Entry Detail
PDB ID:
5J0A
Keywords:
Title:
Crystal structure of PDZ-binding kinase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lymphokine-activated killer T-cell-originated protein kinase
Gene (Uniprot):PBK
Mutagens:T198E
Chain IDs:A
Chain Length:300
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lymphokine-activated killer T-cell-originated protein kinase
Gene (Uniprot):PBK
Mutagens:T198E
Chain IDs:B
Chain Length:304
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The crystal structure of an inactive dimer of PDZ-binding kinase
Biochem.Biophys.Res.Commun. 476 586 593 (2016)
PMID: 27262437 DOI: 10.1016/j.bbrc.2016.05.166

Abstact

The overexpression of PDZ-binding kinase/T-LAK cell-originated protein kinase (PBK/TOPK) has been associated with hematologic tumors, breast cancer and various other cancers. However, the three-dimensional structure of PBK has not been solved. In this study, we determined the crystal structure of human PBK, which has two phospho-mimicking mutations T9E and T198E. The structural data indicated that PBK may assemble into an inactive dimer in alkaline conditions. Analytical size-exclusion chromatography and analytical ultracentrifugation confirmed that PBK exists in a conformational transition between dimers and monomers at different pH conditions. Co-IP and kinase assays suggested that the active state of PBK is a monomer and does not form a dimer even under alkaline conditions. These results showed that the conformational transition of PBK is important for its kinase activity regulation. Collectively, our observations may provide a novel starting point for structure-based functional studies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures