ISDA

Deposition Date 2016-03-27

Release Date 2017-04-05

Last Version Date 2024-05-15

Entry Detail

PDB ID:

5J05

Keywords:

DNA

Title:

DIY G-Quadruplexes: Solution structure of d(GGGTTTGGGTTTTGGGAGGG) in sodium

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

100

Conformers Submitted:

Selection Criteria:

structures with the lowest energy

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*GP*GP*TP*TP*TP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*AP*GP*GP*G)-3')
Chain IDs:A
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Encoding canonical DNA quadruplex structure.

Dvorkin, S.A, Karsisiotis, A.I, Webba da Silva, M.Show

Sci Adv 4 eaat3007 eaat3007 (2018)

PMID: 30182059 DOI: 10.1126/sciadv.aat3007

Abstact

The main challenge in DNA quadruplex design is to encode a three-dimensional structure into the primary sequence, despite its multiple, repetitive guanine segments. We identify and detail structural elements describing all 14 feasible canonical quadruplex scaffolds and demonstrate their use in control of design. This work outlines a new roadmap for implementation of targeted design of quadruplexes for material, biotechnological, and therapeutic applications.

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Primary Citation of related structures