5IXM image
Deposition Date 2016-03-23
Release Date 2016-05-18
Last Version Date 2024-03-06
Entry Detail
PDB ID:
5IXM
Title:
The LPS Transporter LptDE from Yersinia pestis, core complex
Biological Source:
Source Organism:
Yersinia pestis (Taxon ID: 632)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LPS-assembly protein LptD
Gene (Uniprot):lptD
Chain IDs:A, C, E, G
Chain Length:577
Number of Molecules:4
Biological Source:Yersinia pestis
Polymer Type:polypeptide(L)
Molecule:LPS-assembly lipoprotein LptE
Gene (Uniprot):lptE
Chain IDs:B, D, F, H
Chain Length:198
Number of Molecules:4
Biological Source:Yersinia pestis
Ligand Molecules
Primary Citation
Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.
Structure 24 965 976 (2016)
PMID: 27161977 DOI: 10.1016/j.str.2016.03.026

Abstact

Incorporation of lipopolysaccharide (LPS) into the outer membrane of Gram-negative bacteria is essential for viability, and is accomplished by a two-protein complex called LptDE. We solved crystal structures of the core LptDE complexes from Yersinia pestis, Klebsiella pneumoniae, Pseudomonas aeruginosa, and a full-length structure of the K. pneumoniae LptDE complex. Our structures adopt the same plug and 26-strand β-barrel architecture found recently for the Shigella flexneri and Salmonella typhimurium LptDE structures, illustrating a conserved fold across the family. A comparison of the only two full-length structures, SfLptDE and our KpLptDE, reveals a 21° rotation of the LptD N-terminal domain that may impart flexibility on the trans-envelope LptCAD scaffold. Utilizing mutagenesis coupled to an in vivo functional assay and molecular dynamics simulations, we demonstrate the critical role of Pro231 and Pro246 in the function of the LptD lateral gate that allows partitioning of LPS into the outer membrane.

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Primary Citation of related structures