5IV5 image
Deposition Date 2016-03-19
Release Date 2016-05-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
5IV5
Keywords:
VIRAL PROTEIN
Title:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex
Biological Source:
Source Organism(s):
Enterobacteria phage T4 (Taxon ID: 10665)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.11 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
5IV5 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp6
Gene (Uniprot):6
Chain IDs:A, B, X, Y, UA (auth: u), VA (auth: v), RB (auth: BH), SB (auth: BI), OC (auth: EA), PC (auth: EB), LD (auth: GD), MD (auth: GE)
Chain Length:660
Number of Molecules:12
Biological Source:Enterobacteria phage T4
UniProt ID:P19060 Pfam ID:PF21379, PF21515, PF21387, PF21871, PF21472
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp7
Gene (Uniprot):7
Chain IDs:C, Z, WA (auth: w), TB (auth: BJ), QC (auth: EC), ND (auth: GF)
Chain Length:1032
Number of Molecules:6
Biological Source:Enterobacteria phage T4
UniProt ID:P19061 Pfam ID:PF21428, PF21427, PF21456
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp8
Gene (Uniprot):8
Chain IDs:D, E, AA (auth: a), BA (auth: b), XA (auth: x), YA (auth: y), UB (auth: CA), VB (auth: CB), RC (auth: ED), SC (auth: EE), OD (auth: GG), PD (auth: GH)
Chain Length:660
Number of Molecules:12
Biological Source:Enterobacteria phage T4
UniProt ID:P19062 Pfam ID:PF09215
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp9
Gene (Uniprot):9
Chain IDs:F, G, H, CA (auth: c), DA (auth: d), EA (auth: e), ZA (auth: z), AB (auth: AA), BB (auth: AB), WB (auth: CC), XB (auth: CD), YB (auth: CE), TC (auth: EF), UC (auth: EG), VC (auth: EH), QD (auth: GI), RD (auth: GJ), SD (auth: HA)
Chain Length:288
Number of Molecules:18
Biological Source:Enterobacteria phage T4
UniProt ID:P10927 Pfam ID:PF07880, PF23618
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp10
Gene (Uniprot):10
Chain IDs:I, J, K, FA (auth: f), GA (auth: g), HA (auth: h), CB (auth: AC), DB (auth: AD), EB (auth: AE), ZB (auth: CF), AC (auth: CG), BC (auth: CH), WC (auth: EI), XC (auth: EJ), YC (auth: FA), TD (auth: HB), UD (auth: HC), VD (auth: HD)
Chain Length:602
Number of Molecules:18
Biological Source:Enterobacteria phage T4
UniProt ID:P10928 Pfam ID:PF07880, PF22670, PF21939, PF23618
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp11
Gene (Uniprot):11
Chain IDs:L, M, N, IA (auth: i), JA (auth: j), KA (auth: k), FB (auth: AF), GB (auth: AG), HB (auth: AH), CC (auth: CI), DC (auth: CJ), EC (auth: DA), ZC (auth: FB), AD (auth: FC), BD (auth: FD), WD (auth: HE), XD (auth: HF), YD (auth: HG)
Chain Length:219
Number of Molecules:18
Biological Source:Enterobacteria phage T4
UniProt ID:P10929 Pfam ID:PF08677
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Short tail fiber protein gp12
Gene (Uniprot):12
Chain IDs:O, P, Q, LA (auth: l), MA (auth: m), NA (auth: n), IB (auth: AI), JB (auth: AJ), KB (auth: BA), FC (auth: DB), GC (auth: DC), HC (auth: DD), CD (auth: FE), DD (auth: FF), ED (auth: FG), ZD (auth: HH), AE (auth: HI), BE (auth: HJ)
Chain Length:527
Number of Molecules:18
Biological Source:Enterobacteria phage T4
UniProt ID:P10930 Pfam ID:PF14928, PF09089, PF07484
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail tube protein gp19
Gene (Uniprot):19
Chain IDs:R, S, OA (auth: o), PA (auth: p), LB (auth: BB), MB (auth: BC), IC (auth: DE), JC (auth: DF), FD (auth: FH), GD (auth: FI), CE (auth: IA), DE (auth: IB)
Chain Length:163
Number of Molecules:12
Biological Source:Enterobacteria phage T4
UniProt ID:P13333 Pfam ID:PF06841
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp25
Gene (Uniprot):25
Chain IDs:T, QA (auth: q), NB (auth: BD), KC (auth: DG), HD (auth: FJ), EE (auth: IC)
Chain Length:132
Number of Molecules:6
Biological Source:Enterobacteria phage T4
UniProt ID:P09425 Pfam ID:PF04965
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate tail-tube protein gp48
Gene (Uniprot):48
Chain IDs:U, RA (auth: r), OB (auth: BE), LC (auth: DH), ID (auth: GA), FE (auth: ID)
Chain Length:364
Number of Molecules:6
Biological Source:Enterobacteria phage T4
UniProt ID:P13339 Pfam ID:PF11091
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate wedge protein gp53
Gene (Uniprot):53
Chain IDs:V, SA (auth: s), PB (auth: BF), MC (auth: DI), JD (auth: GB), GE (auth: IE)
Chain Length:196
Number of Molecules:6
Biological Source:Enterobacteria phage T4
UniProt ID:P16011 Pfam ID:PF11246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate tail-tube protein gp54
Gene (Uniprot):54
Chain IDs:W, TA (auth: t), QB (auth: BG), NC (auth: DJ), KD (auth: GC), HE (auth: IF)
Chain Length:320
Number of Molecules:6
Biological Source:Enterobacteria phage T4
UniProt ID:P13341
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidoglycan hydrolase gp5
Gene (Uniprot):5
Chain IDs:IE (auth: YA), JE (auth: YB), KE (auth: YC)
Chain Length:575
Number of Molecules:3
Biological Source:Enterobacteria phage T4
UniProt ID:P16009 Pfam ID:PF06714, PF00959, PF06715
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate hub protein gp27
Gene (Uniprot):27
Chain IDs:LE (auth: YD), ME (auth: YE), NE (auth: YF)
Chain Length:391
Number of Molecules:3
Biological Source:Enterobacteria phage T4
UniProt ID:P17172 Pfam ID:PF09097, PF09096
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Uncharacterized 10.2 kDa protein in segC-Gp6 intergenic region
Gene (Uniprot):5.4
Chain IDs:OE (auth: ZA)
Chain Length:97
Number of Molecules:1
Biological Source:Enterobacteria phage T4
UniProt ID:P39234 Pfam ID:PF05488
Ligand Molecules
FE
ZN
Primary Citation
Structure of the T4 baseplate and its function in triggering sheath contraction.
Nature 533 346 352 (2016)
PMID: 27193680 DOI: 10.1038/nature17971

Abstact

Several systems, including contractile tail bacteriophages, the type VI secretion system and R-type pyocins, use a multiprotein tubular apparatus to attach to and penetrate host cell membranes. This macromolecular machine resembles a stretched, coiled spring (or sheath) wound around a rigid tube with a spike-shaped protein at its tip. A baseplate structure, which is arguably the most complex part of this assembly, relays the contraction signal to the sheath. Here we present the atomic structure of the approximately 6-megadalton bacteriophage T4 baseplate in its pre- and post-host attachment states and explain the events that lead to sheath contraction in atomic detail. We establish the identity and function of a minimal set of components that is conserved in all contractile injection systems and show that the triggering mechanism is universally conserved.

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Primary Citation of related structures
5IV5
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